Structural Similarities for the Entities in PDB 4HG4

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Feb-02-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,B,C,D,E,F,G,H,I

Description: Hemagglutinin HA1 protein | Length: 327

No structure alignment results are available for 4HG4.A, 4HG4.B, 4HG4.C, 4HG4.D, 4HG4.E, 4HG4.F, 4HG4.G, 4HG4.H, 4HG4.I explicitly.

These chains are represented by chain 3KU3.A which has more than 95% sequence identity.

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View how chain 4HG4.I compares with the representative chain PDP:3KU3Aa. Select a comparison method:


Entity #2 | Chains a,b,c,d,e,f,g,h,i

Description: Hemagglutinin HA2 protein | Length: 174

No structure alignment results are available for 4HG4.a, 4HG4.b, 4HG4.c, 4HG4.d, 4HG4.e, 4HG4.f, 4HG4.g, 4HG4.h, 4HG4.i explicitly.

These chains are represented by chain 3KU3.B which is 100% sequence identical.

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Entity #3 | Chains J,L,N,P,R,T,V,X,Z

Description: Fab 2G1 heavy chain protein | Length: 223

No structure alignment results are available for 4HG4.J, 4HG4.L, 4HG4.N, 4HG4.P, 4HG4.R, 4HG4.T, 4HG4.V, 4HG4.X, 4HG4.Z explicitly.

These chains are represented by chain 4NZU.L which has more than 70% sequence identity.

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Entity #4 | Chains K,M,O,Q,S,U,W,Y,z

Description: Fab 2G1 light chain protein | Length: 214

No structure alignment results are available for 4HG4.K, 4HG4.M, 4HG4.O, 4HG4.Q, 4HG4.S, 4HG4.U, 4HG4.W, 4HG4.Y, 4HG4.z explicitly.

These chains are represented by chain 4NZU.L which has more than 90% sequence identity.

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References