Structural Similarities for the Entities in PDB 4HEA

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Apr-26-2016

Info & Help Documentation



A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains 1,B

Description: NADH-quinone oxidoreductase subunit 1 protein | Length: 438

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Entity #10 | Chains A,P

Description: NADH-quinone oxidoreductase subunit 7 protein | Length: 119

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Entity #11 | Chains J,R

Description: NADH-quinone oxidoreductase subunit 10 protein | Length: 176

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Entity #12 | Chains K,S

Description: NADH-quinone oxidoreductase subunit 11 protein | Length: 95

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Entity #13 | Chains L,T

Description: NADH-quinone oxidoreductase subunit 12 protein | Length: 606

No structure alignment results are available for 4HEA.L, 4HEA.T explicitly.

These chains are represented by chain 3RKO.B which has more than 40% sequence identity.

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View how chain 4HEA.T compares with the representative chain PDP:3RKOBa. Select a comparison method:


Entity #14 | Chains M,U

Description: NADH-quinone oxidoreductase subunit 13 protein | Length: 469

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Entity #15 | Chains N,V

Description: NADH-quinone oxidoreductase subunit 14 protein | Length: 427

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Entity #16 | Chains H,Q

Description: NADH-quinone oxidoreductase subunit 8 protein | Length: 365

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Entity #2 | Chains 2,C

Description: NADH-quinone oxidoreductase subunit 2 protein | Length: 181

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Entity #3 | Chains 3,D

Description: NADH-quinone oxidoreductase subunit 3 protein | Length: 783

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Entity #4 | Chains 4,E

Description: NADH-quinone oxidoreductase subunit 4 protein | Length: 409

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Entity #5 | Chains 5,F

Description: NADH-quinone oxidoreductase subunit 5 protein | Length: 207

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Entity #6 | Chains 6,G

Description: NADH-quinone oxidoreductase subunit 6 protein | Length: 181

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Entity #7 | Chains 9,O

Description: NADH-quinone oxidoreductase subunit 9 protein | Length: 182

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Entity #8 | Chains 7,I

Description: NADH-quinone oxidoreductase subunit 15 protein | Length: 129

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Entity #9 | Chains W,X

Description: Putative uncharacterized protein TTHA1528 protein | Length: 131

No structure alignment results are available for 4HEA.W, 4HEA.X explicitly.

These chains are represented by chain 1WNA.a which is 100% sequence identical.

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View how chain 4HEA.X compares with the representative chain d1wnaa1. Select a comparison method:


References