Structural Similarities for the Entities in PDB 4HE8

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Jul-19-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,B

Description: NADH-quinone oxidoreductase subunit 7 protein | Length: 119

No structure alignment results are available for 4HE8.A, 4HE8.B explicitly.

These chains are represented by chain 4HEA.A which is 100% sequence identical.

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View how chain 4HE8.B compares with the representative chain PDP:4HEAAa. Select a comparison method:


Entity #2 | Chains D,J

Description: NADH-quinone oxidoreductase subunit 10 protein | Length: 176

No structure alignment results are available for 4HE8.D, 4HE8.J explicitly.

These chains are represented by chain 4HEA.J which is 100% sequence identical.

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Entity #3 | Chains E,K

Description: NADH-quinone oxidoreductase subunit 11 protein | Length: 95

No structure alignment results are available for 4HE8.E, 4HE8.K explicitly.

These chains are represented by chain 4HEA.K which is 100% sequence identical.

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Entity #4 | Chains F,L

Description: NADH-quinone oxidoreductase subunit 12 protein | Length: 606

No structure alignment results are available for 4HE8.F, 4HE8.L explicitly.

These chains are represented by chain 3RKO.B which has more than 40% sequence identity.

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Entity #5 | Chains G,M

Description: NADH-quinone oxidoreductase subunit 13 protein | Length: 469

No structure alignment results are available for 4HE8.G, 4HE8.M explicitly.

These chains are represented by chain 4HEA.M which is 100% sequence identical.

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Entity #6 | Chains I,N

Description: NADH-quinone oxidoreductase subunit 14 protein | Length: 427

No structure alignment results are available for 4HE8.I, 4HE8.N explicitly.

These chains are represented by chain 4HEA.N which is 100% sequence identical.

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Entity #7 | Chains C,H

Description: NADH-quinone oxidoreductase subunit 8 protein | Length: 365

No structure alignment results are available for 4HE8.C, 4HE8.H explicitly.

These chains are represented by chain 4HEA.H which is 100% sequence identical.

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References