Structural Similarities for the Entities in PDB 4H1L

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Apr-26-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,D

Description: HLA class II histocompatibility antigen, DR alpha chain protein | Length: 178

No structure alignment results are available for 4H1L.A, 4H1L.D explicitly.

These chains are represented by chain 4X5W.A which is 100% sequence identical.

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View how chain 4H1L.D compares with the representative chain PDP:4X5WAa. Select a comparison method:


Entity #2 | Chains B,E

Description: MHC class II antigen protein | Length: 187

No structure alignment results are available for 4H1L.B, 4H1L.E explicitly.

These chains are represented by chain 4X5W.B which has more than 90% sequence identity.

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View how chain 4H1L.E compares with the representative chain PDP:4X5WBa. Select a comparison method:


Entity #3 | Chains C,F

Description: mimotope peptide protein | Length: 13

This entity is too short to be considered for the all vs. all structure alignments.


Entity #4 | Chains G,I

Description: Ani2.3 TCR A chain protein | Length: 113

No structure alignment results are available for 4H1L.G, 4H1L.I explicitly.

These chains are represented by chain 4UNU.A which has more than 40% sequence identity.

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View how chain 4H1L.I compares with the representative chain PDP:4UNUAa. Select a comparison method:


Entity #5 | Chains H,J

Description: Ani2.3 TCR B chain protein | Length: 111

No structure alignment results are available for 4H1L.H, 4H1L.J explicitly.

These chains are represented by chain 2AQ2.a which has more than 50% sequence identity.

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View how chain 4H1L.J compares with the representative chain d2aq2a1. Select a comparison method:


References