Structural Similarities for the Entities in PDB 4H0L

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Apr-26-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A

Description: Cytochrome b6 protein | Length: 215

No structure alignment results are available for 4H0L.A explicitly.

It is represented by chain 4OGQ.A which has more than 95% sequence identity.

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View how chain 4H0L.A compares with the representative chain PDP:4OGQAa. Select a comparison method:


Entity #2 | Chains B

Description: Cytochrome b6-f complex subunit 4 protein | Length: 160

No structure alignment results are available for 4H0L.B explicitly.

It is represented by chain 4OGQ.B which has more than 90% sequence identity.

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View how chain 4H0L.B compares with the representative chain PDP:4OGQBa. Select a comparison method:


Entity #3 | Chains C

Description: Apocytochrome f protein | Length: 289

No structure alignment results are available for 4H0L.C explicitly.

It is represented by chain 4H44.C which has more than 70% sequence identity.

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Entity #4 | Chains D

Description: Cytochrome b6-f complex iron-sulfur subunit protein | Length: 179

No structure alignment results are available for 4H0L.D explicitly.

It is represented by chain 4OGQ.D which has more than 70% sequence identity.

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Entity #5 | Chains E

Description: Cytochrome b6-f complex subunit 6 protein | Length: 32

No structure alignment results are available for 4H0L.E explicitly.

It is represented by chain 4PV1.E which is 100% sequence identical.

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Entity #6 | Chains F

Description: Cytochrome b6-f complex subunit 7 protein | Length: 35

No structure alignment results are available for 4H0L.F explicitly.

It is represented by chain 4OGQ.F which has more than 70% sequence identity.

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Entity #7 | Chains G

Description: Cytochrome b6-f complex subunit 5 protein | Length: 37

No structure alignment results are available for 4H0L.G explicitly.

It is represented by chain 4OGQ.G which has more than 70% sequence identity.

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Entity #8 | Chains H

Description: Cytochrome b6-f complex subunit 8 protein | Length: 29

No structure alignment results are available for 4H0L.H explicitly.

It is represented by chain 4OGQ.H which has more than 70% sequence identity.

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References