Structural Similarities for the Entities in PDB 4GYP

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Nov-29-2016

Info & Help Documentation



A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,B

Description: Glucarate dehydratase protein | Length: 446

No structure alignment results are available for 4GYP.A, 4GYP.B explicitly.

These chains are represented by chain 4G8T.A which has more than 70% sequence identity.

Show structure comparison results

  Loading...

View how chain 4GYP.B compares with the representative chain PDP:4G8TAa. Select a comparison method:


Entity #2 | Chains C,D

Description: Glucarate dehydratase-related protein protein | Length: 458

No structure alignment results are available for 4GYP.C, 4GYP.D explicitly.

These chains are represented by chain 4G8T.A which has more than 50% sequence identity.

Show structure comparison results

  Loading...

View how chain 4GYP.D compares with the representative chain PDP:4G8TAa. Select a comparison method:


References