Structural Similarities for the Entities in PDB 4GP5

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Aug-23-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A

Description: Cytochrome c oxidase subunit 1 protein | Length: 568

No structure alignment results are available for 4GP5.A explicitly.

It is represented by chain 3S8G.A which has more than 95% sequence identity.

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View how chain 4GP5.A compares with the representative chain PDP:3S8GAa. Select a comparison method:


Entity #2 | Chains B

Description: Cytochrome c oxidase subunit 2 protein | Length: 168

No structure alignment results are available for 4GP5.B explicitly.

It is represented by chain 3S8G.B which is 100% sequence identical.

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View how chain 4GP5.B compares with the representative chain PDP:3S8GBa. Select a comparison method:


Entity #3 | Chains C

Description: Cytochrome c oxidase polypeptide 2A protein | Length: 34

No structure alignment results are available for 4GP5.C explicitly.

It is represented by chain 3S8G.C which is 100% sequence identical.

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View how chain 4GP5.C compares with the representative chain PDP:3S8GC_. Select a comparison method:


References