Structural Similarities for the Entities in PDB 4GL2

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-20-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,B

Description: Interferon-induced helicase C domain-containing protein 1 protein | Length: 699

No structure alignment results are available for 4GL2.A, 4GL2.B explicitly.

These chains are represented by chain 5JAJ.A which has more than 40% sequence identity.

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View how chain 4GL2.B compares with the representative chain PDP:5JAJAa. Select a comparison method:


Entity #2 | Chains C,E

Description: RNA (5'-R(*AP*UP*CP*CP*GP*CP*GP*GP*CP*CP*CP*U)-3') rna | Length: 12

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #3 | Chains D,F

Description: RNA (5'-R(P*AP*GP*GP*GP*CP*CP*GP*CP*GP*GP*AP*U)-3') rna | Length: 12

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


References