Structural Similarities for the Entities in PDB 4GD3

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Aug-23-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains Q,R,S,T

Description: Hydrogenase-1 small chain protein | Length: 335

No structure alignment results are available for 4GD3.Q, 4GD3.R, 4GD3.S, 4GD3.T explicitly.

These chains are represented by chain 5ADU.S which has more than 95% sequence identity.

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View how chain 4GD3.T compares with the representative chain PDP:5ADUSa. Select a comparison method:


Entity #2 | Chains J,K,L,M

Description: Hydrogenase-1 large chain protein | Length: 582

No structure alignment results are available for 4GD3.J, 4GD3.K, 4GD3.L, 4GD3.M explicitly.

These chains are represented by chain 4U9H.L which has more than 40% sequence identity.

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View how chain 4GD3.M compares with the representative chain PDP:4U9HLa. Select a comparison method:


Entity #3 | Chains A,B

Description: Ni/Fe-hydrogenase 1 B-type cytochrome subunit protein | Length: 235

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References