Structural Similarities for the Entities in PDB 4GCL

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Nov-17-2015

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,B,C,D,E,F,G,H

Description: Nucleoid occlusion factor SlmA protein | Length: 212

No structure alignment results are available for 4GCL.A, 4GCL.B, 4GCL.C, 4GCL.D, 4GCL.E, 4GCL.F, 4GCL.G, 4GCL.H explicitly.

These chains are represented by chain 4GFK.A which has more than 50% sequence identity.

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View how chain 4GCL.H compares with the representative chain PDP:4GFKAa. Select a comparison method:

Entity #2 | Chains R,T,W,Z

Description: DNA (5'-D(*AP*GP*TP*GP*AP*GP*TP*AP*CP*TP*CP*AP*CP*T)-3') dna | Length: 14

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.