Structural Similarities for the Entities in PDB 4GAM

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: May-24-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains B,G,L,Q

Description: Methane monooxygenase component A beta chain protein | Length: 389

No structure alignment results are available for 4GAM.B, 4GAM.G, 4GAM.L, 4GAM.Q explicitly.

These chains are represented by chain 1MTY.b which is 100% sequence identical.

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View how chain 4GAM.Q compares with the representative chain d1mtyb_. Select a comparison method:


Entity #2 | Chains A,F,K,P

Description: Methane monooxygenase component A alpha chain protein | Length: 527

No structure alignment results are available for 4GAM.A, 4GAM.F, 4GAM.K, 4GAM.P explicitly.

These chains are represented by chain 1MTY.d which has more than 95% sequence identity.

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Entity #3 | Chains C,H,M,R

Description: Methane monooxygenase component A gamma chain protein | Length: 170

No structure alignment results are available for 4GAM.C, 4GAM.H, 4GAM.M, 4GAM.R explicitly.

These chains are represented by chain 1MTY.g which has more than 95% sequence identity.

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View how chain 4GAM.R compares with the representative chain d1mtyg_. Select a comparison method:


Entity #4 | Chains D,I,N,S

Description: Methane monooxygenase regulatory protein B protein | Length: 141

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References