Structural Similarities for the Entities in PDB 4G0W

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Jul-26-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,B

Description: DNA topoisomerase 2-beta protein | Length: 803

No structure alignment results are available for 4G0W.A, 4G0W.B explicitly.

These chains are represented by chain 3QX3.A which is 100% sequence identical.

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View how chain 4G0W.B compares with the representative chain PDP:3QX3Aa. Select a comparison method:


Entity #2 | Chains C,E

Description: DNA (5'-D(P*AP*GP*CP*CP*GP*AP*GP*C)-3') dna | Length: 8

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #3 | Chains D,F

Description: DNA (5'-D(P*TP*GP*CP*AP*GP*CP*TP*CP*GP*GP*CP*T)-3') dna | Length: 12

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


References