The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].
To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment  is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser .
Currently viewing only significant results (P-value < 0.001). Show all available results.
Cluster data are up-to-date as of: May-03-2016
The table is sorting is by P-value by default. Clicking on the column header will change the sort order. Select the Filter Results icon to apply other filtering criteria.
A detailed description of the procedure for the all vs. all alignments is available.
Description: Vacuolar protein sorting-associated protein 9A protein |
represented by chain 2EFH.A
which has more than 95% sequence identity.
View how chain 4G01.A compares with the representative chain PDP:2EFHAa. Select a comparison method:
Description: Ras-related protein RABF2b protein |
represented by chain 2CE2.X
which has more than 40% sequence identity.
View how chain 4G01.B compares with the representative chain PDP:2CE2Xa. Select a comparison method:
The RCSB PDB (citation) is managed by two members of the Research Collaboratory for Structural Bioinformatics:
RCSB PDB is a member of the
The RCSB PDB is funded by a grant (DBI-1338415) from the
National Science Foundation, the
National Institutes of Health, and the
US Department of Energy.