Structural Similarities for the Entities in PDB 4FQX

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Jul-19-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains C

Description: HLA class II histocompatibility antigen, DM alpha chain protein | Length: 203

No structure alignment results are available for 4FQX.C explicitly.

It is represented by chain 1HDM.a which has more than 95% sequence identity.

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View how chain 4FQX.C compares with the representative chain d1hdma1. Select a comparison method:


Entity #2 | Chains D

Description: HLA class II histocompatibility antigen, DM beta chain protein | Length: 199

No structure alignment results are available for 4FQX.D explicitly.

It is represented by chain 1HDM.b which has more than 95% sequence identity.

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View how chain 4FQX.D compares with the representative chain d1hdmb1. Select a comparison method:


Entity #3 | Chains E

Description: Synthetic peptide protein | Length: 11

This entity is too short to be considered for the all vs. all structure alignments.


Entity #4 | Chains A

Description: HLA class II histocompatibility antigen, DR alpha chain protein | Length: 191

No structure alignment results are available for 4FQX.A explicitly.

It is represented by chain 4X5W.A which has more than 95% sequence identity.

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View how chain 4FQX.A compares with the representative chain PDP:4X5WAa. Select a comparison method:


Entity #5 | Chains B

Description: HLA class II histocompatibility antigen, DRB1-1 beta chain protein | Length: 208

No structure alignment results are available for 4FQX.B explicitly.

It is represented by chain 4X5W.B which has more than 95% sequence identity.

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View how chain 4FQX.B compares with the representative chain PDP:4X5WBa. Select a comparison method:


References