Structural Similarities for the Entities in PDB 4F7U

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: May-24-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,C

Description: Small nuclear ribonucleoprotein Sm D1 protein | Length: 119

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Entity #2 | Chains B,D

Description: Small nuclear ribonucleoprotein Sm D2 protein | Length: 118

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Entity #3 | Chains E,H

Description: Small nuclear ribonucleoprotein E protein | Length: 92

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Entity #4 | Chains F,I

Description: Small nuclear ribonucleoprotein F protein | Length: 86

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Entity #5 | Chains G,J

Description: Small nuclear ribonucleoprotein G protein | Length: 76

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Entity #6 | Chains P,Q

Description: ICLn protein protein | Length: 129

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References