Structural Similarities for the Entities in PDB 4F58

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Jul-26-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains L,M,N,O

Description: Light chain of Fab of a neutralizing antibody L3 protein | Length: 213

No structure alignment results are available for 4F58.L, 4F58.M, 4F58.N, 4F58.O explicitly.

These chains are represented by chain 4NZU.L which has more than 50% sequence identity.

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View how chain 4F58.O compares with the representative chain PDP:4NZULa. Select a comparison method:


Entity #2 | Chains H,I,J,K

Description: Heavy chain of Fab of a neutralizing antibody L3 protein | Length: 226

No structure alignment results are available for 4F58.H, 4F58.I, 4F58.J, 4F58.K explicitly.

These chains are represented by chain 4NZU.L which has more than 70% sequence identity.

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View how chain 4F58.K compares with the representative chain PDP:4NZULa. Select a comparison method:


References