Structural Similarities for the Entities in PDB 4DX9

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Jun-13-2017

Info & Help Documentation

A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains 0,1,2,3,4,5,A,C,E,G,I,K,M,O,Q,S,U,W,Y,a,c,e,g,i,k,m,o,q,s,u,w,y

Description: Integrin beta-1-binding protein 1 protein | Length: 157

No structure alignment results are available for 4DX9.0, 4DX9.1, 4DX9.2, 4DX9.3, 4DX9.4, 4DX9.5, 4DX9.A, 4DX9.C, 4DX9.E, 4DX9.G, 4DX9.I, 4DX9.K, 4DX9.M, 4DX9.O, 4DX9.Q, 4DX9.S, 4DX9.U, 4DX9.W, 4DX9.Y, 4DX9.a, 4DX9.c, 4DX9.e, 4DX9.g, 4DX9.i, 4DX9.k, 4DX9.m, 4DX9.o, 4DX9.q, 4DX9.s, 4DX9.u, 4DX9.w, 4DX9.y explicitly.

These chains are represented by chain 4JIF.A which is 100% sequence identical.

Show structure comparison results


View how chain 4DX9.y compares with the representative chain PDP:4JIFAa. Select a comparison method:

Entity #2 | Chains 6,7,8,9,B,D,F,H,J,L,N,P,R,T,V,X,Z,b,d,f,h,j,l,n,p,r,t,v,x,z

Description: Integrin beta-1 protein | Length: 15

This entity is too short to be considered for the all vs. all structure alignments.