The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].
To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].
Currently viewing only significant results (P-value < 0.001). Show all available results.
Cluster data are up-to-date as of: Sep-20-2016
The table is sorting is by P-value by default. Clicking on the column header will change the sort order. Select the Filter Results icon to apply other filtering criteria.
A detailed description of the procedure for the all vs. all alignments is available.
Description: 16S rRNA rna | Length: 1522
This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.
Description: ribosomal protein S10 protein | Length: 105
It is represented by chain 3D3B.J which has more than 50% sequence identity.
View how chain 4DV3.J compares with the representative chain PDP:3D3BJa. Select a comparison method:
Description: ribosomal protein S11 protein | Length: 129
It is represented by chain 4CVN.E which has more than 40% sequence identity.
View how chain 4DV3.K compares with the representative chain PDP:4CVNEa. Select a comparison method:
Description: ribosomal protein S12 protein | Length: 135
It is represented by chain XXXX.null which has more than 70% sequence identity.
View how chain 4DV3.L compares with the representative chain xxxx. Select a comparison method:
Description: ribosomal protein S13 protein | Length: 126
It is represented by chain XXXX.null which is 100% sequence identical.
View how chain 4DV3.M compares with the representative chain xxxx. Select a comparison method:
Description: ribosomal protein S14 protein | Length: 61
View how chain 4DV3.N compares with the representative chain xxxx. Select a comparison method:
Description: ribosomal protein S15 protein | Length: 89
It is represented by chain 4A5U.B which has more than 50% sequence identity.
View how chain 4DV3.O compares with the representative chain PDP:4A5UBa. Select a comparison method:
Description: ribosomal protein S16 protein | Length: 88
View how chain 4DV3.P compares with the representative chain xxxx. Select a comparison method:
Description: ribosomal protein S17 protein | Length: 105
It is represented by chain XXXX.null which has more than 95% sequence identity.
View how chain 4DV3.Q compares with the representative chain xxxx. Select a comparison method:
Description: ribosomal protein S18 protein | Length: 88
View how chain 4DV3.R compares with the representative chain xxxx. Select a comparison method:
Description: ribosomal protein S19 protein | Length: 93
It is represented by chain XXXX.null which has more than 50% sequence identity.
View how chain 4DV3.S compares with the representative chain xxxx. Select a comparison method:
Description: ribosomal protein S2 protein | Length: 256
View how chain 4DV3.B compares with the representative chain xxxx. Select a comparison method:
Description: ribosomal protein S20 protein | Length: 106
View how chain 4DV3.T compares with the representative chain xxxx. Select a comparison method:
Description: ribosomal protein THX protein | Length: 27
View how chain 4DV3.U compares with the representative chain xxxx. Select a comparison method:
Description: ribosomal protein S3 protein | Length: 239
View how chain 4DV3.C compares with the representative chain xxxx. Select a comparison method:
Description: ribosomal protein S4 protein | Length: 209
View how chain 4DV3.D compares with the representative chain xxxx. Select a comparison method:
Description: ribosomal protein S5 protein | Length: 162
View how chain 4DV3.E compares with the representative chain xxxx. Select a comparison method:
Description: ribosomal protein S6 protein | Length: 101
It is represented by chain 1CQM.a which has more than 95% sequence identity.
View how chain 4DV3.F compares with the representative chain d1cqma_. Select a comparison method:
Description: ribosomal protein S7 protein | Length: 156
It is represented by chain 1RSS.a which is 100% sequence identical.
View how chain 4DV3.G compares with the representative chain d1rssa_. Select a comparison method:
Description: ribosomal protein S8 protein | Length: 138
It is represented by chain 1SEI.a which has more than 50% sequence identity.
View how chain 4DV3.H compares with the representative chain d1seia_. Select a comparison method:
Description: ribosomal protein S9 protein | Length: 128
View how chain 4DV3.I compares with the representative chain xxxx. Select a comparison method: