Structural Similarities for the Entities in PDB 4DR4

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: May-03-2016

Info & Help Documentation



A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A

Description: 16S rRNA rna | Length: 1522

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #10 | Chains J

Description: 30S ribosomal protein S10 protein | Length: 105

No structure alignment results are available for 4DR4.J explicitly.

It is represented by chain 3D3B.J which has more than 50% sequence identity.

Show structure comparison results

  Loading...

View how chain 4DR4.J compares with the representative chain PDP:3D3BJa. Select a comparison method:


Entity #11 | Chains K

Description: 30S ribosomal protein S11 protein | Length: 129

No structure alignment results are available for 4DR4.K explicitly.

It is represented by chain 4CVN.E which has more than 40% sequence identity.

Show structure comparison results

  Loading...

View how chain 4DR4.K compares with the representative chain PDP:4CVNEa. Select a comparison method:


Entity #12 | Chains L

Description: 30S ribosomal protein S12 protein | Length: 135

No structure alignment results are available for 4DR4.L explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

Show structure comparison results

  Loading...

View how chain 4DR4.L compares with the representative chain xxxx. Select a comparison method:


Entity #13 | Chains M

Description: 30S ribosomal protein S13 protein | Length: 126

No structure alignment results are available for 4DR4.M explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

Show structure comparison results

  Loading...

View how chain 4DR4.M compares with the representative chain xxxx. Select a comparison method:


Entity #14 | Chains N

Description: 30S ribosomal protein S14 protein | Length: 61

No structure alignment results are available for 4DR4.N explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

Show structure comparison results

  Loading...

View how chain 4DR4.N compares with the representative chain xxxx. Select a comparison method:


Entity #15 | Chains O

Description: 30S ribosomal protein S15 protein | Length: 89

No structure alignment results are available for 4DR4.O explicitly.

It is represented by chain 4A5U.B which has more than 50% sequence identity.

Show structure comparison results

  Loading...

View how chain 4DR4.O compares with the representative chain PDP:4A5UBa. Select a comparison method:


Entity #16 | Chains P

Description: 30S ribosomal protein S16 protein | Length: 88

No structure alignment results are available for 4DR4.P explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

Show structure comparison results

  Loading...

View how chain 4DR4.P compares with the representative chain xxxx. Select a comparison method:


Entity #17 | Chains Q

Description: 30S ribosomal protein S17 protein | Length: 105

No structure alignment results are available for 4DR4.Q explicitly.

It is represented by chain XXXX.null which has more than 95% sequence identity.

Show structure comparison results

  Loading...

View how chain 4DR4.Q compares with the representative chain xxxx. Select a comparison method:


Entity #18 | Chains R

Description: 30S ribosomal protein S18 protein | Length: 88

No structure alignment results are available for 4DR4.R explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

Show structure comparison results

  Loading...

View how chain 4DR4.R compares with the representative chain xxxx. Select a comparison method:


Entity #19 | Chains S

Description: 30S ribosomal protein S19 protein | Length: 93

No structure alignment results are available for 4DR4.S explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

Show structure comparison results

  Loading...

View how chain 4DR4.S compares with the representative chain xxxx. Select a comparison method:


Entity #2 | Chains B

Description: 30S ribosomal protein S2 protein | Length: 256

No structure alignment results are available for 4DR4.B explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

Show structure comparison results

  Loading...

View how chain 4DR4.B compares with the representative chain xxxx. Select a comparison method:


Entity #20 | Chains T

Description: 30S ribosomal protein S20 protein | Length: 106

No structure alignment results are available for 4DR4.T explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

Show structure comparison results

  Loading...

View how chain 4DR4.T compares with the representative chain xxxx. Select a comparison method:


Entity #21 | Chains U

Description: 30S ribosomal protein THX protein | Length: 27

No structure alignment results are available for 4DR4.U explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

Show structure comparison results

  Loading...

View how chain 4DR4.U compares with the representative chain xxxx. Select a comparison method:


Entity #22 | Chains V

Description: 5'-R(*UP*UP*U)-3' rna | Length: 3

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #23 | Chains W

Description: 5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*C)-3' rna | Length: 15

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #3 | Chains C

Description: 30S ribosomal protein S3 protein | Length: 239

No structure alignment results are available for 4DR4.C explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

Show structure comparison results

  Loading...

View how chain 4DR4.C compares with the representative chain xxxx. Select a comparison method:


Entity #4 | Chains D

Description: 30S ribosomal protein S4 protein | Length: 209

No structure alignment results are available for 4DR4.D explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

Show structure comparison results

  Loading...

View how chain 4DR4.D compares with the representative chain xxxx. Select a comparison method:


Entity #5 | Chains E

Description: 30S ribosomal protein S5 protein | Length: 162

No structure alignment results are available for 4DR4.E explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

Show structure comparison results

  Loading...

View how chain 4DR4.E compares with the representative chain xxxx. Select a comparison method:


Entity #6 | Chains F

Description: 30S ribosomal protein S6 protein | Length: 101

No structure alignment results are available for 4DR4.F explicitly.

It is represented by chain 1CQM.a which has more than 95% sequence identity.

Show structure comparison results

  Loading...

View how chain 4DR4.F compares with the representative chain d1cqma_. Select a comparison method:


Entity #7 | Chains G

Description: 30S ribosomal protein S7 protein | Length: 156

No structure alignment results are available for 4DR4.G explicitly.

It is represented by chain 1RSS.a which is 100% sequence identical.

Show structure comparison results

  Loading...

View how chain 4DR4.G compares with the representative chain d1rssa_. Select a comparison method:


Entity #8 | Chains H

Description: 30S ribosomal protein S8 protein | Length: 138

No structure alignment results are available for 4DR4.H explicitly.

It is represented by chain 1SEI.a which has more than 50% sequence identity.

Show structure comparison results

  Loading...

View how chain 4DR4.H compares with the representative chain d1seia_. Select a comparison method:


Entity #9 | Chains I

Description: 30S ribosomal protein S9 protein | Length: 128

No structure alignment results are available for 4DR4.I explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

Show structure comparison results

  Loading...

View how chain 4DR4.I compares with the representative chain xxxx. Select a comparison method:


References