Structural Similarities for the Entities in PDB 4C7O

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Feb-02-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,C

Description: SIGNAL RECOGNITION PARTICLE PROTEIN protein | Length: 298

No structure alignment results are available for 4C7O.A, 4C7O.C explicitly.

These chains are represented by chain 1LS1.A which has more than 40% sequence identity.

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View how chain 4C7O.C compares with the representative chain d1ls1a1. Select a comparison method:


Entity #2 | Chains B,D

Description: SIGNAL RECOGNITION PARTICLE RECEPTOR FTSY protein | Length: 278

No structure alignment results are available for 4C7O.B, 4C7O.D explicitly.

These chains are represented by chain 1VMA.A which has more than 50% sequence identity.

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View how chain 4C7O.D compares with the representative chain d1vmaa1. Select a comparison method:


Entity #3 | Chains E

Description: SRP RNA rna | Length: 48

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


References