The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].
To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].
Currently viewing only significant results (P-value < 0.001). Show all available results.
Cluster data are up-to-date as of: Sep-27-2017
The table is sorting is by P-value by default. Clicking on the column header will change the sort order. Select the Filter Results icon to apply other filtering criteria.
A detailed description of the procedure for the all vs. all alignments is available.
You can also use the structure comparison tool to compare any 2 given structures
Description: SIGNAL RECOGNITION PARTICLE PROTEIN protein | Length: 298
These chains are represented by chain 1LS1.a which has more than 40% sequence identity.
View how chain 4C7O.C compares with the representative chain d1ls1a1. Select a comparison method:
Description: SIGNAL RECOGNITION PARTICLE RECEPTOR FTSY protein | Length: 278
These chains are represented by chain XXXX.null which is 100% sequence identical.
View how chain 4C7O.D compares with the representative chain xxxx. Select a comparison method:
Description: SRP RNA rna | Length: 48
This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.