Structural Similarities for the Entities in PDB 4C4W

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Aug-23-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,B,E,F

Description: U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A protein | Length: 102

No structure alignment results are available for 4C4W.A, 4C4W.B, 4C4W.E, 4C4W.F explicitly.

These chains are represented by chain 1NU4.a which has more than 95% sequence identity.

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View how chain 4C4W.F compares with the representative chain d1nu4a_. Select a comparison method:


Entity #2 | Chains C,G

Description: 50S RIBOSOMAL PROTEIN L7AE protein | Length: 123

No structure alignment results are available for 4C4W.C, 4C4W.G explicitly.

These chains are represented by chain 1XBI.a which has more than 50% sequence identity.

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View how chain 4C4W.G compares with the representative chain d1xbia1. Select a comparison method:


Entity #3 | Chains D,H

Description: TSKT-23 rna | Length: 35

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


References