Structural Similarities for the Entities in PDB 4C2M

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

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A detailed description of the procedure for the all vs. all alignments is available.

You can also use the structure comparison tool to compare any 2 given structures

Entity #1 | Chains 1,L

Description: DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 protein | Length: 70

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Entity #10 | Chains F,U

Description: DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2 protein | Length: 155

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Entity #11 | Chains H,W

Description: DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3 protein | Length: 146

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Entity #12 | Chains I,X

Description: DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA12 protein | Length: 125

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Entity #13 | Chains J,Y

Description: DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 protein | Length: 70

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Entity #14 | Chains K,Z

Description: DNA-DIRECTED RNA POLYMERASES I AND III SUBUNIT RPAC2 protein | Length: 142

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Entity #2 | Chains 2,M

Description: DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA49 protein | Length: 415

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Entity #3 | Chains 3,N

Description: DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA34 protein | Length: 233

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Entity #4 | Chains 4,G,O,V

Description: DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA43 protein | Length: 326

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Entity #5 | Chains A,P

Description: DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA190 protein | Length: 1664

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Entity #6 | Chains B,Q

Description: DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA135 protein | Length: 1203

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Entity #7 | Chains C,R

Description: DNA-DIRECTED RNA POLYMERASES I AND III SUBUNIT RPAC1 protein | Length: 335

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Entity #8 | Chains D,S

Description: DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA14 protein | Length: 137

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Entity #9 | Chains E,T

Description: DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 protein | Length: 215

No structure alignment results are available for 4C2M.E, 4C2M.T explicitly.

These chains are represented by chain 1DZF.a which is 100% sequence identical.

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View how chain 4C2M.T compares with the representative chain d1dzfa1. Select a comparison method:


References