Structural Similarities for the Entities in PDB 4BY9

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

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Cluster data are up-to-date as of: Feb-02-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,B

Description: SSR26 rna | Length: 72

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #2 | Chains C,F,I,L

Description: NOP5/NOP56 RELATED PROTEIN protein | Length: 366

No structure alignment results are available for 4BY9.C, 4BY9.F, 4BY9.I, 4BY9.L explicitly.

These chains are represented by chain 3NVI.A which is 100% sequence identical.

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View how chain 4BY9.L compares with the representative chain PDP:3NVIAa. Select a comparison method:


Entity #3 | Chains D,G,J,M

Description: 50S RIBOSOMAL PROTEIN L7AE protein | Length: 121

No structure alignment results are available for 4BY9.D, 4BY9.G, 4BY9.J, 4BY9.M explicitly.

These chains are represented by chain 1XBI.A which has more than 50% sequence identity.

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View how chain 4BY9.M compares with the representative chain d1xbia1. Select a comparison method:


Entity #4 | Chains E,H,K,N

Description: FIBRILLARIN-LIKE RRNA/TRNA 2'-O-METHYLTRANSFERASE protein | Length: 227

No structure alignment results are available for 4BY9.E, 4BY9.H, 4BY9.K, 4BY9.N explicitly.

These chains are represented by chain 1G8A.A which has more than 95% sequence identity.

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View how chain 4BY9.N compares with the representative chain d1g8aa_. Select a comparison method:


Entity #5 | Chains W,X,Y,Z

Description: 5'-R(*UP*CP*GP*CP*CP*CP*AP*UP*CP*AP*CP)-3' rna | Length: 11

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


References