Structural Similarities for the Entities in PDB 4BXZ

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Nov-29-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A

Description: DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 protein | Length: 1733

No structure alignment results are available for 4BXZ.A explicitly.

It is represented by chain 1TWF.a which is 100% sequence identical.

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View how chain 4BXZ.A compares with the representative chain d1twfa_. Select a comparison method:


Entity #10 | Chains J

Description: DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC5 protein | Length: 70

No structure alignment results are available for 4BXZ.J explicitly.

It is represented by chain 4C2M.J which is 100% sequence identical.

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Entity #11 | Chains K

Description: DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11 protein | Length: 120

No structure alignment results are available for 4BXZ.K explicitly.

It is represented by chain 1TWF.k which is 100% sequence identical.

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Entity #12 | Chains L

Description: DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC4 protein | Length: 70

No structure alignment results are available for 4BXZ.L explicitly.

It is represented by chain 4C2M.1 which is 100% sequence identical.

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Entity #13 | Chains X

Description: TRANSCRIPTION FACTOR BYE1 protein | Length: 594

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Entity #2 | Chains B

Description: DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 protein | Length: 1224

No structure alignment results are available for 4BXZ.B explicitly.

It is represented by chain 1TWF.b which is 100% sequence identical.

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Entity #3 | Chains C

Description: DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 protein | Length: 318

No structure alignment results are available for 4BXZ.C explicitly.

It is represented by chain 1TWF.c which is 100% sequence identical.

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Entity #4 | Chains D

Description: DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB4 protein | Length: 221

No structure alignment results are available for 4BXZ.D explicitly.

It is represented by chain 3PO2.D which is 100% sequence identical.

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Entity #5 | Chains E

Description: DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 protein | Length: 215

No structure alignment results are available for 4BXZ.E explicitly.

It is represented by chain 1DZF.a which is 100% sequence identical.

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Entity #6 | Chains F

Description: DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2 protein | Length: 155

No structure alignment results are available for 4BXZ.F explicitly.

It is represented by chain 4C2M.F which is 100% sequence identical.

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Entity #7 | Chains G

Description: DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 protein | Length: 171

No structure alignment results are available for 4BXZ.G explicitly.

It is represented by chain 1Y14.b which is 100% sequence identical.

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Entity #8 | Chains H

Description: DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3 protein | Length: 146

No structure alignment results are available for 4BXZ.H explicitly.

It is represented by chain 4C2M.H which is 100% sequence identical.

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Entity #9 | Chains I

Description: DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 protein | Length: 122

No structure alignment results are available for 4BXZ.I explicitly.

It is represented by chain 1TWF.i which is 100% sequence identical.

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References