Structural Similarities for the Entities in PDB 4BQA

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: May-24-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,D,G

Description: PROTEIN C-ETS-2 protein | Length: 142

No structure alignment results are available for 4BQA.A, 4BQA.D, 4BQA.G explicitly.

These chains are represented by chain 1GVJ.a which has more than 70% sequence identity.

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View how chain 4BQA.G compares with the representative chain d1gvja_. Select a comparison method:


Entity #2 | Chains B,E,H

Description: 5'-D(*AP*CP*CP*GP*GP*AP*AP*GP*TP*GP)-3' dna | Length: 10

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #3 | Chains C,F,I

Description: 5'-D(*CP*AP*CP*TP*TP*CP*CP*GP*GP*TP)-3' dna | Length: 10

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


References