Structural Similarities for the Entities in PDB 4B3O

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Aug-23-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A

Description: REVERSE TRANSCRIPTASE/RIBONUCLEASE H protein | Length: 560

No structure alignment results are available for 4B3O.A explicitly.

It is represented by chain 4G1Q.A which has more than 95% sequence identity.

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View how chain 4B3O.A compares with the representative chain PDP:4G1QAa. Select a comparison method:


Entity #2 | Chains B

Description: P51 RT protein | Length: 441

No structure alignment results are available for 4B3O.B explicitly.

It is represented by chain 4G1Q.B which has more than 95% sequence identity.

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View how chain 4B3O.B compares with the representative chain PDP:4G1QBa. Select a comparison method:


Entity #3 | Chains D

Description: 5'-D(*CP*GP*TP*AP*TP*GP*CP*CP*TP*AP*TP*AP*GP*TP *TP*AP*TP*TP*GP*TP*GP*GP*CP*C)-3' dna | Length: 24

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #4 | Chains R

Description: 5'-R(*AP*UP*GP*AP*3DRP*GP*GP*CP*CP*AP*CP*AP*AP*UP*AP *AP*CP*UP*AP*UP*AP*GP*GP*CP*AP*UP*A)-3' rna | Length: 27

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


References