Structural Similarities for the Entities in PDB 4AYM

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Aug-23-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,B,E,F

Description: COMPLEMENT FACTOR H protein | Length: 125

No structure alignment results are available for 4AYM.A, 4AYM.B, 4AYM.E, 4AYM.F explicitly.

These chains are represented by chain 2YBY.A which has more than 50% sequence identity.

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View how chain 4AYM.F compares with the representative chain PDP:2YBYAa. Select a comparison method:


Entity #2 | Chains C,D

Description: FACTOR H BINDING PROTEIN protein | Length: 270

No structure alignment results are available for 4AYM.C, 4AYM.D explicitly.

These chains are represented by chain 4Z3T.A which has more than 70% sequence identity.

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View how chain 4AYM.D compares with the representative chain PDP:4Z3TAa. Select a comparison method:


References