Structural Similarities for the Entities in PDB 4AWJ

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Jul-19-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,D,G,J

Description: TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 2 protein | Length: 104

No structure alignment results are available for 4AWJ.A, 4AWJ.D, 4AWJ.G, 4AWJ.J explicitly.

These chains are represented by chain 4B9K.A which is 100% sequence identical.

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View how chain 4AWJ.J compares with the representative chain PDP:4B9KAa. Select a comparison method:


Entity #2 | Chains B,E,H,K

Description: TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 1 protein | Length: 97

No structure alignment results are available for 4AWJ.B, 4AWJ.E, 4AWJ.H, 4AWJ.K explicitly.

These chains are represented by chain 4AJY.C which is 100% sequence identical.

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View how chain 4AWJ.K compares with the representative chain PDP:4AJYCa. Select a comparison method:


Entity #3 | Chains C,F,I,L

Description: VON HIPPEL-LINDAU DISEASE TUMOR SUPPRESSOR protein | Length: 163

No structure alignment results are available for 4AWJ.C, 4AWJ.F, 4AWJ.I, 4AWJ.L explicitly.

These chains are represented by chain 4AJY.V which is 100% sequence identical.

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References