The AEROPATH project and Pseudomonas aeruginosa high-throughput crystallographic studies for assessment of potential targets in early stage drug discovery.

Structural Similarities for the Entities in PDB 4AVY

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

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A detailed description of the procedure for the all vs. all alignments is available.

You can also use the structure comparison tool to compare any 2 given structures

Entity #1 | Chains A,B

Description: PROBABLE SHORT-CHAIN DEHYDROGENASE protein | Length: 242

No structure alignment results are available for 4AVY.A, 4AVY.B explicitly.

These chains are represented by chain 1ZK4.a which has more than 40% sequence identity.

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View how chain 4AVY.B compares with the representative chain d1zk4a1. Select a comparison method: