Structural Similarities for the Entities in PDB 4AU3

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-20-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,C,D

Description: SERPIN PEPTIDASE INHIBITOR, CLADE H (HEAT SHOCK PROTEIN 47 ), MEMBER 1, (COLLAGEN BINDING PROTEIN 1) protein | Length: 392

No structure alignment results are available for 4AU3.A, 4AU3.C, 4AU3.D explicitly.

These chains are represented by chain 4AU2.A which is 100% sequence identical.

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View how chain 4AU3.D compares with the representative chain PDP:4AU2Aa. Select a comparison method:


Entity #2 | Chains B

Description: SERPYIN PEPTIDASE INHIBITOR, CLADE H (HEAT SHOCK PROTEIN 47 ), MEMBER 1, (COLLAGEN BINDING PROTEIN 1) protein | Length: 392

No structure alignment results are available for 4AU3.B explicitly.

It is represented by chain 4AU2.A which has more than 95% sequence identity.

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View how chain 4AU3.B compares with the representative chain PDP:4AU2Aa. Select a comparison method:


Entity #3 | Chains E,F,G,H,I,J

Description: 18ER COLLAGEN MODEL PEPTIDE 15-R8 protein | Length: 20

References