Structural Similarities for the Entities in PDB 4AKC

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,C,E,G

Description: AGGLUTININ ALPHA CHAIN protein | Length: 133

No structure alignment results are available for 4AKC.A, 4AKC.C, 4AKC.E, 4AKC.G explicitly.

These chains are represented by chain 4R6R.A which has more than 95% sequence identity.

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View how chain 4AKC.G compares with the representative chain PDP:4R6RAa. Select a comparison method:


Entity #2 | Chains B,D,F,H

Description: AGGLUTININ BETA-4 CHAIN protein | Length: 21

No structure alignment results are available for 4AKC.B, 4AKC.D, 4AKC.F, 4AKC.H explicitly.

These chains are represented by chain 4AK4.B which is 100% sequence identical.

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View how chain 4AKC.H compares with the representative chain PDP:4AK4B_. Select a comparison method:


References