Structural Similarities for the Entities in PDB 4AK4

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

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A detailed description of the procedure for the all vs. all alignments is available.

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Entity #1 | Chains A,C,E,G,I,K,M,O

Description: AGGLUTININ ALPHA CHAIN protein | Length: 133

No structure alignment results are available for 4AK4.A, 4AK4.C, 4AK4.E, 4AK4.G, 4AK4.I, 4AK4.K, 4AK4.M, 4AK4.O explicitly.

These chains are represented by chain 4R6R.A which has more than 95% sequence identity.

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View how chain 4AK4.O compares with the representative chain PDP:4R6RAa. Select a comparison method:

Entity #2 | Chains B,D,F,H,J,L,N,P

Description: AGGLUTININ BETA-4 CHAIN protein | Length: 21