Structural Similarities for the Entities in PDB 4A8A

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Aug-23-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,B,C,D,E,F,G,H,I,J,K,L

Description: PERIPLASMIC PH-DEPENDENT SERINE ENDOPROTEASE DEGQ protein | Length: 436

No structure alignment results are available for 4A8A.A, 4A8A.B, 4A8A.C, 4A8A.D, 4A8A.E, 4A8A.F, 4A8A.G, 4A8A.H, 4A8A.I, 4A8A.J, 4A8A.K, 4A8A.L explicitly.

These chains are represented by chain 3PV2.A which has more than 40% sequence identity.

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View how chain 4A8A.L compares with the representative chain PDP:3PV2Aa. Select a comparison method:


Entity #2 | Chains M

Description: LYSOZYME C protein | Length: 129

No structure alignment results are available for 4A8A.M explicitly.

It is represented by chain 2VB1.a which is 100% sequence identical.

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References