Structural Similarities for the Entities in PDB 4A3G

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Feb-09-2016

Info & Help Documentation



A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A

Description: DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 protein | Length: 1732

No structure alignment results are available for 4A3G.A explicitly.

It is represented by chain 1TWF.A which is 100% sequence identical.

Show structure comparison results

  Loading...

View how chain 4A3G.A compares with the representative chain d1twfa_. Select a comparison method:


Entity #10 | Chains J

Description: DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 protein | Length: 70

No structure alignment results are available for 4A3G.J explicitly.

It is represented by chain 4C2M.J which is 100% sequence identical.

Show structure comparison results

  Loading...

View how chain 4A3G.J compares with the representative chain PDP:4C2MJa. Select a comparison method:


Entity #11 | Chains K

Description: DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11 protein | Length: 120

No structure alignment results are available for 4A3G.K explicitly.

It is represented by chain 1TWF.K which is 100% sequence identical.

Show structure comparison results

  Loading...

View how chain 4A3G.K compares with the representative chain d1twfk_. Select a comparison method:


Entity #12 | Chains L

Description: DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 protein | Length: 70

No structure alignment results are available for 4A3G.L explicitly.

It is represented by chain 4C2M.1 which is 100% sequence identical.

Show structure comparison results

  Loading...

View how chain 4A3G.L compares with the representative chain PDP:4C2M1_. Select a comparison method:


Entity #13 | Chains N

Description: NON TEMPLATE DNA 5'-D(*GP*GP*CP*AP*CP*AP*AP*CP*TP*GP*CP *GP*CP*TP)-3' dna | Length: 14

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #14 | Chains P

Description: TRANSCRIPT RNA 5'-R(*CP*AP)-3' rna | Length: 2

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #15 | Chains T

Description: TEMPLATE DNA 5'-D(*AP*GP*CP*GP*CP*AP*GP*TP*TP*GP*TP*GP *CP*TP*AP*TP*GP*AP*BRUP*AP*TP*TP*TP*TP*TP*AP*DT)-3' dna | Length: 27

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #2 | Chains B

Description: DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 protein | Length: 1224

No structure alignment results are available for 4A3G.B explicitly.

It is represented by chain 1TWF.B which is 100% sequence identical.

Show structure comparison results

  Loading...

View how chain 4A3G.B compares with the representative chain d1twfb_. Select a comparison method:


Entity #3 | Chains C

Description: DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 protein | Length: 318

No structure alignment results are available for 4A3G.C explicitly.

It is represented by chain 1TWF.C which is 100% sequence identical.

Show structure comparison results

  Loading...

View how chain 4A3G.C compares with the representative chain d1twfc1. Select a comparison method:


Entity #4 | Chains D

Description: DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB4 protein | Length: 221

No structure alignment results are available for 4A3G.D explicitly.

It is represented by chain 3PO2.D which is 100% sequence identical.

Show structure comparison results

  Loading...

View how chain 4A3G.D compares with the representative chain PDP:3PO2Da. Select a comparison method:


Entity #5 | Chains E

Description: DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 protein | Length: 215

No structure alignment results are available for 4A3G.E explicitly.

It is represented by chain 1DZF.A which is 100% sequence identical.

Show structure comparison results

  Loading...

View how chain 4A3G.E compares with the representative chain d1dzfa1. Select a comparison method:


Entity #6 | Chains F

Description: DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2 protein | Length: 155

No structure alignment results are available for 4A3G.F explicitly.

It is represented by chain 4C2M.F which is 100% sequence identical.

Show structure comparison results

  Loading...

View how chain 4A3G.F compares with the representative chain PDP:4C2MFa. Select a comparison method:


Entity #7 | Chains G

Description: RPB7, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 protein | Length: 171

No structure alignment results are available for 4A3G.G explicitly.

It is represented by chain 1Y14.B which is 100% sequence identical.

Show structure comparison results

  Loading...

View how chain 4A3G.G compares with the representative chain d1y14b1. Select a comparison method:


Entity #8 | Chains H

Description: DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3 protein | Length: 146

No structure alignment results are available for 4A3G.H explicitly.

It is represented by chain 4C2M.H which is 100% sequence identical.

Show structure comparison results

  Loading...

View how chain 4A3G.H compares with the representative chain PDP:4C2MHa. Select a comparison method:


Entity #9 | Chains I

Description: DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 protein | Length: 122

No structure alignment results are available for 4A3G.I explicitly.

It is represented by chain 1TWF.I which is 100% sequence identical.

Show structure comparison results

  Loading...

View how chain 4A3G.I compares with the representative chain d1twfi1. Select a comparison method:


References