Structural Similarities for the Entities in PDB 486D

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Feb-02-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A

Description: P-SITE TRNA OF 70S RIBOSOME rna | Length: 74

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #2 | Chains B

Description: P-SITE CODON OF 70S RIBOSOME rna | Length: 3

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #3 | Chains C

Description: A-SITE TRNA OF 70S RIBOSOME rna | Length: 72

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #4 | Chains D

Description: A-SITE CODON OF 70S RIBOSOME rna | Length: 3

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #5 | Chains E

Description: E-SITE TRNA OF 70S RIBOSOME rna | Length: 72

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #6 | Chains F

Description: PENULTIMATE STEM OF 16S RRNA IN THE 70S RIBOSOME rna | Length: 85

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #7 | Chains G

Description: 900 STEM-LOOP OF 16S RRNA IN THE 70S RIBOSOME rna | Length: 33

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


References