Structural Similarities for the Entities in PDB 3ZUN

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Aug-23-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,D,G,J

Description: TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 2 protein | Length: 118

No structure alignment results are available for 3ZUN.A, 3ZUN.D, 3ZUN.G, 3ZUN.J explicitly.

These chains are represented by chain 4AJY.B which is 100% sequence identical.

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View how chain 3ZUN.J compares with the representative chain PDP:4AJYBa. Select a comparison method:


Entity #2 | Chains B,E,H,K

Description: TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 1 protein | Length: 97

No structure alignment results are available for 3ZUN.B, 3ZUN.E, 3ZUN.H, 3ZUN.K explicitly.

These chains are represented by chain 4AJY.C which is 100% sequence identical.

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View how chain 3ZUN.K compares with the representative chain PDP:4AJYCa. Select a comparison method:


Entity #3 | Chains C,F,I,L

Description: VON HIPPEL-LINDAU DISEASE TUMOR SUPPRESSOR protein | Length: 163

No structure alignment results are available for 3ZUN.C, 3ZUN.F, 3ZUN.I, 3ZUN.L explicitly.

These chains are represented by chain 4AJY.V which is 100% sequence identical.

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View how chain 3ZUN.L compares with the representative chain PDP:4AJYVa. Select a comparison method:


References