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The structure of F1-ATPase from Saccharomyces cerevisiae inhibited by its regulatory protein IF1
3ZIA

Structural Similarities for the Entities in PDB 3ZIA

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2]. To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Entity #1: Chains: A,B,C,K,L,M
Description: ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL protein
Length: 510
No structure alignment results are available for 3ZIA.A, 3ZIA.B, 3ZIA.C, 3ZIA.K, 3ZIA.L, 3ZIA.M explicitly.

These chains are represented by chain 2JDI.A which has more than 70% sequence identity.

 Click here to show the structure comparison results for representative 2JDI.A

 
 
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To see how chain 3ZIA.M compares with the representative chain d2jdia1 select a method below:





Entity #2: Chains: D,E,F,N,O,P
Description: ATP SYNTHASE SUBUNIT BETA, MITOCHONDRIAL protein
Length: 478
No structure alignment results are available for 3ZIA.D, 3ZIA.E, 3ZIA.F, 3ZIA.N, 3ZIA.O, 3ZIA.P explicitly.

These chains are represented by chain 2JDI.D which has more than 70% sequence identity.

 Click here to show the structure comparison results for representative 2JDI.D

 
 
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To see how chain 3ZIA.P compares with the representative chain d2jdid1 select a method below:





Entity #3: Chains: G,Q
Description: ATP SYNTHASE SUBUNIT GAMMA, MITOCHONDRIAL protein
Length: 278
No structure alignment results are available for 3ZIA.G, 3ZIA.Q explicitly.

These chains are represented by chain 2JDI.G which has more than 40% sequence identity.

 Click here to show the structure comparison results for representative 2JDI.G

 
 
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To see how chain 3ZIA.Q compares with the representative chain d2jdig1 select a method below:





Entity #4: Chains: H,R
Description: ATP SYNTHASE SUBUNIT DELTA, MITOCHONDRIAL protein
Length: 138
 
 
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Entity #5: Chains: I,S
Description: ATP SYNTHASE SUBUNIT EPSILON, MITOCHONDRIAL protein
Length: 61
 
 
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Entity #6: Chains: J,T
Description: ATPASE INHIBITOR, MITOCHONDRIAL protein
Length: 63
 
 
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  • Update Status Hide
    Dec 16 2014

    Cluster data are up-to-date as of:
     
  • Table Legend Hide
    • Rank: current row position. Changes with different sorting orders and filter rules
    • Domain 2: Domain name of 2nd domain. Can be either a SCOP ID (d<PDB ID><Chain ID><Domain ID>), ProteinDomainParser ID (PDP:<PDB ID><Chain ID><Domain ID>)
    • Title: Protein chain description
    • P-value: P-value of this alignment (FATCAT) (default sorted by this)
    • Score: Raw alignment score (FATCAT)
    • RMSD: RMSD value of the alignment
    • Len1: Domain 1 length
    • Len2: Domain 2 length
    • %ID: % sequence identity in the alignment. A 40% sequence identity filter is applied before the structure alignments are calculated, so most results show low similarity. If the sequences are of vastly different lengths, the clustering procedure will group them in different clusters, even if they share a region of high sequence similarity.
    • %Cov1: The coverage, or %, of aligned residues in chain 1
    • %Cov2: The coverage, or %, of aligned residues in chain 2

    The table is sorting is by P-value by default. Clicking on the column header will change the sort order. Select the Filter Results lense img icon to apply other filtering criteria.

     
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Documentation

A detailed description of the procedure for the all vs. all alignments is available.