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High-resolution cryo-electron microscopy structure of the Trypanosoma brucei ribosome
3ZEY

Structural Similarities for the Entities in PDB 3ZEY

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2]. To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Entity #1: Chains: 0
Description: 40S RIBOSOMAL PROTEIN S3A, PUTATIVE protein
Length: 256
No structure alignment results are available for 3ZEY.0 explicitly.

It is represented by chain 3U5C.B which has more than 40% sequence identity.

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Entity #10: Chains: 9
Description: UBIQUITIN/RIBOSOMAL PROTEIN S27A, PUTATIVE protein
Length: 153
No structure alignment results are available for 3ZEY.9 explicitly.

It is represented by chain 3U5C.f which has more than 40% sequence identity.

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Entity #11: Chains: C
Description: 40S RIBOSOMAL PROTEIN SA, PUTATIVE protein
Length: 277
 
 
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Entity #12: Chains: D
Description: 40S RIBOSOMAL PROTEIN S10, PUTATIVE protein
Length: 172
 
 
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Entity #13: Chains: E
Description: 40S RIBOSOMAL PROTEINS S11, PUTATIVE protein
Length: 174
No structure alignment results are available for 3ZEY.E explicitly.

It is represented by chain 3U5C.L which has more than 50% sequence identity.

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Entity #14: Chains: F
Description: 40S RIBOSOMAL PROTEIN S12 protein
Length: 144
 
 
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Entity #15: Chains: G
Description: 40S RIBOSOMAL PROTEIN S13, PUTATIVE protein
Length: 151
No structure alignment results are available for 3ZEY.G explicitly.

It is represented by chain 3U5C.N which has more than 70% sequence identity.

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Entity #16: Chains: H
Description: 40S RIBOSOMAL PROTEIN S14 protein
Length: 144
No structure alignment results are available for 3ZEY.H explicitly.

It is represented by chain 4CVN.E which has more than 50% sequence identity.

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Entity #17: Chains: I
Description: 40S RIBOSOMAL PROTEIN S15, PUTATIVE protein
Length: 152
No structure alignment results are available for 3ZEY.I explicitly.

It is represented by chain 3U5C.P which has more than 50% sequence identity.

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Entity #18: Chains: J
Description: 40S RIBOSOMAL PROTEIN S15A, PUTATIVE protein
Length: 130
No structure alignment results are available for 3ZEY.J explicitly.

It is represented by chain 1I6U.A which has more than 50% sequence identity.

 Click here to show the structure comparison results for representative 1I6U.A

 
 
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Entity #19: Chains: K
Description: 40S RIBOSOMAL PROTEIN S16, PUTATIVE protein
Length: 149
No structure alignment results are available for 3ZEY.K explicitly.

It is represented by chain 3U5C.Q which has more than 50% sequence identity.

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Entity #2: Chains: 1
Description: 40S RIBOSOMAL PROTEIN S4, PUTATIVE protein
Length: 273
No structure alignment results are available for 3ZEY.1 explicitly.

It is represented by chain 3U5C.E which has more than 50% sequence identity.

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Entity #20: Chains: L
Description: 40S RIBOSOMAL PROTEIN S17, PUTATIVE protein
Length: 142
No structure alignment results are available for 3ZEY.L explicitly.

It is represented by chain 3U5C.R which has more than 50% sequence identity.

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Entity #21: Chains: M
Description: 40S RIBOSOMAL PROTEIN S18, PUTATIVE protein
Length: 153
No structure alignment results are available for 3ZEY.M explicitly.

It is represented by chain 3U5C.S which has more than 50% sequence identity.

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Entity #22: Chains: O
Description: RIBOSOMAL PROTEIN S19, PUTATIVE protein
Length: 167
 
 
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Entity #23: Chains: P
Description: 40S RIBOSOMAL PROTEIN S2, PUTATIVE protein
Length: 266
No structure alignment results are available for 3ZEY.P explicitly.

It is represented by chain 3U5C.C which has more than 50% sequence identity.

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Entity #24: Chains: Q
Description: RIBOSOMAL PROTEIN S20, PUTATIVE protein
Length: 117
No structure alignment results are available for 3ZEY.Q explicitly.

It is represented by chain 3U5C.U which has more than 40% sequence identity.

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Entity #25: Chains: R
Description: 40S RIBOSOMAL PROTEIN S21, PUTATIVE protein
Length: 194
 
 
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Entity #26: Chains: S
Description: 40S RIBOSOMAL PROTEIN S23, PUTATIVE protein
Length: 143
No structure alignment results are available for 3ZEY.S explicitly.

It is represented by chain 3U5C.X which has more than 70% sequence identity.

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Entity #27: Chains: T
Description: 40S RIBOSOMAL PROTEIN S24 protein
Length: 137
No structure alignment results are available for 3ZEY.T explicitly.

It is represented by chain 3U5C.Y which has more than 50% sequence identity.

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Entity #28: Chains: U
Description: 40S RIBOSOMAL PROTEIN S25, PUTATIVE protein
Length: 113
No structure alignment results are available for 3ZEY.U explicitly.

It is represented by chain 3U5C.Z which has more than 40% sequence identity.

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Entity #29: Chains: V
Description: RIBOSOMAL PROTEIN S26, PUTATIVE protein
Length: 111
No structure alignment results are available for 3ZEY.V explicitly.

It is represented by chain 3U5C.a which has more than 50% sequence identity.

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Entity #3: Chains: 2
Description: 40S RIBOSOMAL PROTEIN S5, PUTATIVE protein
Length: 190
No structure alignment results are available for 3ZEY.2 explicitly.

It is represented by chain 1IQV.A which has more than 40% sequence identity.

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Entity #30: Chains: W
Description: 40S RIBOSOMAL PROTEIN S27, PUTATIVE protein
Length: 86
No structure alignment results are available for 3ZEY.W explicitly.

It is represented by chain 3U5C.b which has more than 50% sequence identity.

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Entity #31: Chains: X
Description: 40S RIBOSOMAL PROTEIN S3, PUTATIVE protein
Length: 214
No structure alignment results are available for 3ZEY.X explicitly.

It is represented by chain 4BSZ.A which has more than 50% sequence identity.

 Click here to show the structure comparison results for representative 4BSZ.A

 
 
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Entity #32: Chains: Y
Description: 40S RIBOSOMAL PROTEIN S30, PUTATIVE protein
Length: 66
No structure alignment results are available for 3ZEY.Y explicitly.

It is represented by chain 3U5C.e which has more than 70% sequence identity.

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Entity #33: Chains: Z
Description: 40S RIBOSOMAL PROTEIN S33, PUTATIVE protein
Length: 103
 
 
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Entity #4: Chains: 3
Description: 40S RIBOSOMAL PROTEIN S6 protein
Length: 250
No structure alignment results are available for 3ZEY.3 explicitly.

It is represented by chain 3U5C.G which has more than 50% sequence identity.

 Click here to show the structure comparison results for representative 3U5C.G

 
 
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Entity #5: Chains: 4
Description: RIBOSOMAL PROTEIN S7, PUTATIVE protein
Length: 202
 
 
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Entity #6: Chains: 5
Description: 40S RIBOSOMAL PROTEIN S8 protein
Length: 220
No structure alignment results are available for 3ZEY.5 explicitly.

It is represented by chain 3U5C.I which has more than 50% sequence identity.

 Click here to show the structure comparison results for representative 3U5C.I

 
 
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Entity #7: Chains: 6
Description: 40S RIBOSOMAL PROTEIN S9, PUTATIVE protein
Length: 190
No structure alignment results are available for 3ZEY.6 explicitly.

It is represented by chain 3U5C.J which has more than 50% sequence identity.

 Click here to show the structure comparison results for representative 3U5C.J

 
 
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Entity #8: Chains: 7
Description: GUANINE NUCLEOTIDE-BINDING PROTEIN BETA SUBUNIT-LIKE PROTEIN protein
Length: 318
No structure alignment results are available for 3ZEY.7 explicitly.

It is represented by chain 3FRX.A which has more than 50% sequence identity.

 Click here to show the structure comparison results for representative 3FRX.A

 
 
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Entity #9: Chains: 8
Description: RIBOSOMAL PROTEIN S29, PUTATIVE protein
Length: 57
No structure alignment results are available for 3ZEY.8 explicitly.

It is represented by chain 3U5C.d which has more than 50% sequence identity.

 Click here to show the structure comparison results for representative 3U5C.d

 
 
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  • Update Status Hide
    Nov 18 2014

    Cluster data are up-to-date as of:
     
  • Table Legend Hide
    • Rank: current row position. Changes with different sorting orders and filter rules
    • Domain 2: Domain name of 2nd domain. Can be either a SCOP ID (d<PDB ID><Chain ID><Domain ID>), ProteinDomainParser ID (PDP:<PDB ID><Chain ID><Domain ID>)
    • Title: Protein chain description
    • P-value: P-value of this alignment (FATCAT) (default sorted by this)
    • Score: Raw alignment score (FATCAT)
    • RMSD: RMSD value of the alignment
    • Len1: Domain 1 length
    • Len2: Domain 2 length
    • %ID: % sequence identity in the alignment. A 40% sequence identity filter is applied before the structure alignments are calculated, so most results show low similarity. If the sequences are of vastly different lengths, the clustering procedure will group them in different clusters, even if they share a region of high sequence similarity.
    • %Cov1: The coverage, or %, of aligned residues in chain 1
    • %Cov2: The coverage, or %, of aligned residues in chain 2

    The table is sorting is by P-value by default. Clicking on the column header will change the sort order. Select the Filter Results lense img icon to apply other filtering criteria.

     
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