Structural Similarities for the Entities in PDB 3ZEF

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Apr-26-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,D

Description: A1 CISTRON-SPLICING FACTOR AAR2 protein | Length: 355

No structure alignment results are available for 3ZEF.A, 3ZEF.D explicitly.

These chains are represented by chain 3SBT.B which is 100% sequence identical.

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View how chain 3ZEF.D compares with the representative chain PDP:3SBTBa. Select a comparison method:


Entity #2 | Chains B,E

Description: PRE-MRNA-SPLICING FACTOR 8 protein | Length: 1531

No structure alignment results are available for 3ZEF.B, 3ZEF.E explicitly.

These chains are represented by chain 4I43.B which has more than 95% sequence identity.

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View how chain 3ZEF.E compares with the representative chain PDP:4I43Ba. Select a comparison method:


References