Structural Similarities for the Entities in PDB 3W99

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

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Cluster data are up-to-date as of: Feb-02-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,E

Description: Histone H3.1 protein | Length: 139

No structure alignment results are available for 3W99.A, 3W99.E explicitly.

These chains are represented by chain 1TZY.C which has more than 95% sequence identity.

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Entity #2 | Chains B,F

Description: Histone H4 protein | Length: 91

No structure alignment results are available for 3W99.B, 3W99.F explicitly.

These chains are represented by chain 2HUE.C which is 100% sequence identical.

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Entity #3 | Chains C,G

Description: Histone H2A type 1-B/E protein | Length: 133

No structure alignment results are available for 3W99.C, 3W99.G explicitly.

These chains are represented by chain 4CAY.A which has more than 50% sequence identity.

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Entity #4 | Chains D,H

Description: Histone H2B type 1-J protein | Length: 129

No structure alignment results are available for 3W99.D, 3W99.H explicitly.

These chains are represented by chain 1TZY.B which has more than 95% sequence identity.

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Entity #5 | Chains I,J

Description: 146-mer DNA dna | Length: 146

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


References