Structural Similarities for the Entities in PDB 3W6V

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

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Cluster data are up-to-date as of: May-24-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A

Description: AdpA protein | Length: 147

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Entity #2 | Chains B

Description: DNA (5'-D(*CP*TP*GP*TP*GP*AP*AP*CP*CP*CP*GP*CP*CP*AP*AP*C)-3') dna | Length: 16

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #3 | Chains C

Description: DNA (5'-D(*AP*GP*GP*TP*TP*GP*GP*CP*GP*GP*GP*TP*TP*CP*AP*C)-3') dna | Length: 16

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


References