Structural Similarities for the Entities in PDB 3W1K

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Jul-19-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,B,C,D,E

Description: L-seryl-tRNA(Sec) selenium transferase protein | Length: 452

No structure alignment results are available for 3W1K.A, 3W1K.B, 3W1K.C, 3W1K.D, 3W1K.E explicitly.

These chains are represented by chain 3WCN.A which has more than 95% sequence identity.

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View how chain 3W1K.E compares with the representative chain PDP:3WCNAa. Select a comparison method:


Entity #2 | Chains F,G,H,I,J

Description: selenocysteine tRNA rna | Length: 95

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


References