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Insulin receptor ectodomain construct comprising domains L1-CR in complex with high-affinity insulin analogue [D-PRO-B26]-DTI-NH2, alpha-CT peptide(704-719) and FAB 83-7
3W12

Structural Similarities for the Entities in PDB 3W12

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2]. To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Entity #1: Chains: E
Description: Insulin receptor domains L1-CR protein
Length: 310
No structure alignment results are available for 3W12.E explicitly.

It is represented by chain 4OGA.E which is 100% sequence identical.

 Click here to show the structure comparison results for representative 4OGA.E

 
 
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To see how chain 3W12.E compares with the representative chain PDP:4OGAEa select a method below:





Entity #2: Chains: C
Description: monoclonal antibody fab 83-7 fragment - heavy chain protein
Length: 116
No structure alignment results are available for 3W12.C explicitly.

It is represented by chain 4UNU.A which has more than 40% sequence identity.

 Click here to show the structure comparison results for representative 4UNU.A

 
 
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To see how chain 3W12.C compares with the representative chain PDP:4UNUAa select a method below:





Entity #3: Chains: D
Description: monoclonal antibody fab 83-7 fragment - light chain protein
Length: 114
No structure alignment results are available for 3W12.D explicitly.

It is represented by chain 4UNU.A which has more than 50% sequence identity.

 Click here to show the structure comparison results for representative 4UNU.A

 
 
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To see how chain 3W12.D compares with the representative chain PDP:4UNUAa select a method below:





Entity #4: Chains: A
Description: Insulin A chain protein
Length: 21
No structure alignment results are available for 3W12.A explicitly.

It is represented by chain 3W7Y.A which is 100% sequence identical.

 Click here to show the structure comparison results for representative 3W7Y.A

 
 
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To see how chain 3W12.A compares with the representative chain PDP:3W7YA_ select a method below:





Entity #5: Chains: B
Description: Insulin B chain protein
Length: 26
No structure alignment results are available for 3W12.B explicitly.

It is represented by chain 3W7Y.B which is 100% sequence identical.

 Click here to show the structure comparison results for representative 3W7Y.B

 
 
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To see how chain 3W12.B compares with the representative chain PDP:3W7YB_ select a method below:





Entity #6: Chains: F
Description: Insulin receptor alpha-CT peptide protein
Length: 16

This entity is too short to be considered for the all vs. all structure alignments.

 




  • Update Status Hide
    Sep 16 2014

    Cluster data are up-to-date as of:
     
  • Table Legend Hide
    • Rank: current row position. Changes with different sorting orders and filter rules
    • Domain 2: Domain name of 2nd domain. Can be either a SCOP ID (d<PDB ID><Chain ID><Domain ID>), ProteinDomainParser ID (PDP:<PDB ID><Chain ID><Domain ID>)
    • Title: Protein chain description
    • P-value: P-value of this alignment (FATCAT) (default sorted by this)
    • Score: Raw alignment score (FATCAT)
    • RMSD: RMSD value of the alignment
    • Len1: Domain 1 length
    • Len2: Domain 2 length
    • %ID: % sequence identity in the alignment. A 40% sequence identity filter is applied before the structure alignments are calculated, so most results show low similarity. If the sequences are of vastly different lengths, the clustering procedure will group them in different clusters, even if they share a region of high sequence similarity.
    • %Cov1: The coverage, or %, of aligned residues in chain 1
    • %Cov2: The coverage, or %, of aligned residues in chain 2

    The table is sorting is by P-value by default. Clicking on the column header will change the sort order. Select the Filter Results lense img icon to apply other filtering criteria.

     
Comparison Tool

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PDB 1: Chain 1: ...
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Documentation

A detailed description of the procedure for the all vs. all alignments is available.