Structural Similarities for the Entities in PDB 3VYI

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Nov-17-2015

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,B,C,D,E,F,G,H,I,J,K,L

Description: Voltage-gated hydrogen channel 1 protein | Length: 51

No structure alignment results are available for 3VYI.A, 3VYI.B, 3VYI.C, 3VYI.D, 3VYI.E, 3VYI.F, 3VYI.G, 3VYI.H, 3VYI.I, 3VYI.J, 3VYI.K, 3VYI.L explicitly.

These chains are represented by chain 3VN0.A which has more than 70% sequence identity.

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View how chain 3VYI.L compares with the representative chain PDP:3VN0Aa. Select a comparison method: