Structural Similarities for the Entities in PDB 3VUD

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Mar-28-2017

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A

Description: Mitogen-activated protein kinase 8 protein | Length: 370

No structure alignment results are available for 3VUD.A explicitly.

It is represented by chain 2XRW.A which has more than 95% sequence identity.

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View how chain 3VUD.A compares with the representative chain PDP:2XRWAa. Select a comparison method:

Entity #2 | Chains F

Description: Peptide from C-Jun-amino-terminal kinase-interacting protein 1 protein | Length: 11

This entity is too short to be considered for the all vs. all structure alignments.