Structural Similarities for the Entities in PDB 3VTQ

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

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A detailed description of the procedure for the all vs. all alignments is available.

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Entity #1 | Chains A,B,E

Description: Envelope glycoprotein gp160 protein | Length: 38


Entity #2 | Chains C,D,F

Description: fusion inhibitor MT-Sifuvirtide protein | Length: 39

No structure alignment results are available for 3VTQ.C, 3VTQ.D, 3VTQ.F explicitly.

These chains are represented by chain 3O3Y.A which has more than 50% sequence identity.

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View how chain 3VTQ.F compares with the representative chain PDP:3O3YA_. Select a comparison method: