Structural Similarities for the Entities in PDB 3VR4

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Jun-21-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,B,C

Description: V-type sodium ATPase catalytic subunit A protein | Length: 600

No structure alignment results are available for 3VR4.A, 3VR4.B, 3VR4.C explicitly.

These chains are represented by chain 5BN3.A which has more than 50% sequence identity.

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View how chain 3VR4.C compares with the representative chain PDP:5BN3Aa. Select a comparison method:


Entity #2 | Chains D,E,F

Description: V-type sodium ATPase subunit B protein | Length: 465

No structure alignment results are available for 3VR4.D, 3VR4.E, 3VR4.F explicitly.

These chains are represented by chain 2C61.A which has more than 50% sequence identity.

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Entity #3 | Chains G

Description: V-type sodium ATPase subunit D protein | Length: 217

No structure alignment results are available for 3VR4.G explicitly.

It is represented by chain 3AON.A which is 100% sequence identical.

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Entity #4 | Chains H

Description: V-type sodium ATPase subunit G protein | Length: 115

No structure alignment results are available for 3VR4.H explicitly.

It is represented by chain 3AON.B which is 100% sequence identical.

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References