Structural Similarities for the Entities in PDB 3VND

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

Info & Help Documentation

A detailed description of the procedure for the all vs. all alignments is available.

You can also use the structure comparison tool to compare any 2 given structures

Entity #1 | Chains A,B,C,D,E,F,G,H

Description: Tryptophan synthase alpha chain protein | Length: 267

No structure alignment results are available for 3VND.A, 3VND.B, 3VND.C, 3VND.D, 3VND.E, 3VND.F, 3VND.G, 3VND.H explicitly.

These chains are represented by chain 5CGQ.A which has more than 50% sequence identity.

Show structure comparison results


View how chain 3VND.H compares with the representative chain PDP:5CGQAa. Select a comparison method: