Structural Similarities for the Entities in PDB 3VHT

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Nov-29-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A

Description: Green fluorescent protein protein | Length: 235

No structure alignment results are available for 3VHT.A explicitly.

It is represented by chain 2WUR.A which has more than 95% sequence identity.

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Entity #2 | Chains B

Description: Green fluorescent protein, ATPase WRNIP1 protein | Length: 273

No structure alignment results are available for 3VHT.B explicitly.

It is represented by chain 3AI4.A which has more than 70% sequence identity.

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Entity #3 | Chains C

Description: Ubiquitin protein | Length: 76

No structure alignment results are available for 3VHT.C explicitly.

It is represented by chain 4XOF.A which is 100% sequence identical.

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References