Structural Similarities for the Entities in PDB 3VGW

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: May-24-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,B,C,D,E,F,G,H

Description: Avidin protein | Length: 123

No structure alignment results are available for 3VGW.A, 3VGW.B, 3VGW.C, 3VGW.D, 3VGW.E, 3VGW.F, 3VGW.G, 3VGW.H explicitly.

These chains are represented by chain 1Y55.X which has more than 70% sequence identity.

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View how chain 3VGW.H compares with the representative chain PDP:1Y55Xa. Select a comparison method: